The 5 Best Warehouse Management Software of 2025

Our top five warehouse management systems all allow you to track your inventory across multiple locations. They’re also all compatible with barcode scanners—which makes a lot of sense considering how much easier warehousing becomes when barcode scanners are in the picture.

Here’s how our five contenders stack up in terms of the most popular warehouse management features:

The multi-warehouse management system comes part of the Zoho Inventory package, along with inventory control, multichannel selling, order management, order fulfillment, and reports.

What does this mean for you? It means that adding on Zoho’s software gives you the chance to transfer stock between warehouse, manage locations, and dispatch orders from the all-in-one Zoho software. This is a big deal because many brands require business owners to add integrations and other costly add-ons to their software in order to access these features. Zoho does not.

With Zoho, you can organize your warehouses and complete purchase orders from the same application. It doesn’t get much better than that!

Fishbowl makes for a pretty decent warehouse management solution, thanks to its focus on usability and affordability. It's number one in value because it provides inventory management with the warehousing and supply chain features you need at a fraction of the price.

Fishbowl offers a ton of features to help you keep tabs on your inventory levels. You can track inventory movement between multiple locations and even study sales trends on a warehouse-by-warehouse basis. Fishbowl also makes order fulfillment a breeze, thanks to its embedded UPS features.

Fishbowl Warehouse also integrates seamlessly with QuickBooks. This helps you maintain inventory accuracy since you don’t have to manually enter your inventory levels into your accounting system.

All that being said, Fishbowl isn’t a perfect warehouse management software. In fact, it lacks a few warehousing features that other platforms on our list provide—like cross-docking support, which helps you efficiently move product where it needs to go as quickly as possible.

So how did it get our number one spot? It provides exceptional value. Fishbowl software starts at $4,395, which seems pretty steep until you remember that’s the price for a lifetime of use. While you can renew your software for $1,395 per year to continue getting access to new updates, you don’t have to renew—your existing software will continue to work. And since you don’t have to pay monthly fees, the service is actually extremely affordable.

Manhattan WMS is, at its core, a flexible inventory management and warehousing platform. As a third-party logistics (3PL) warehouse manager, Manhattan WMS provides flexibility and power to your fulfillment methods.

For starters, Manhattan gives you more freedom in your supply chain management by letting you arrange multi-carrier deliveries. That means you can choose to have your goods shipped by multiple logistics providers along the way, so you can choose the fastest or most cost-effective supply chain solution for your needs.

Once your goods arrive at your warehouse, Manhattan WMS offers cross-docking support. So if your items arrive and need to be shipped out immediately, you can use your warehouse inventory management software to order a cargo transfer from one truck to another. You can also take advantage of Manhattan’s order streaming feature to prioritize shipments with fast turnaround times—even pulling items from other orders to fulfill priority orders.

Beyond order management, Manhattan also makes it easy to optimize your warehouse layout for easy picking and packing. You can also set material handling policies, ensuring everyone in your organization knows the processes for moving, protecting, storing, tracking, and controlling your inventory.

Oracle Warehouse Management Cloud (or Oracle WMS) really shines when it comes to labor management options. With Oracle, you can easily measure completion times for warehouse tasks. You can also track efficiency by work group, work area, and even by process type for even greater insight. This gives you an accurate picture of your warehousing tasks and helps you set doable material handling goals for your employees.